Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s HindIII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_HindIII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6158158-SRR6158159/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  105,146,120
 Normal Paired: 33,875,820 (32.22%)
 Chimeric Paired: 62,478,439 (59.42%)
 Chimeric Ambiguous: 7,106,291 (6.76%)
 Unmapped: 1,685,570 (1.60%)
 Ligation Motif Present: 79,089,235 (75.22%)
Alignable (Normal+Chimeric Paired): 96,354,259 (91.64%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-10-01T18:25:14,357]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 88,250,477 (83.93%)
PCR Duplicates: 8,103,782 (7.71%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 540,238,101
Intra-fragment Reads: 4,811,250 (4.58% / 5.45%)
Below MAPQ Threshold: 7,618,874 (7.25% / 8.63%)
Hi-C Contacts: 75,820,353 (72.11% / 85.91%)
 Ligation Motif Present: 59,741,372  (56.82% / 67.70%)
 3' Bias (Long Range): 93% - 7%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 21,098,589  (20.07% / 23.91%)
Intra-chromosomal: 54,721,764  (52.04% / 62.01%)
Short Range (<20Kb): 21,526,788  (20.47% / 24.39%)
Long Range (>20Kb): 33,194,973  (31.57% / 37.61%)